COVID-19 Research and Information Resources

UCSF COVID-19 Research Data Mart available for UCSF IRB approved studies. (IRB #20-30545, COVID-19 collaborative study for prospective and retrospective computational analysis). Facilitate access for UCSF researchers who would like access to these identified data for research. Data extracts from the UCSF Electronic Health Record System (APeX) include patients who have been tested for or diagnosed with COVID-19.

UC BRAID has assembled a team of clinicians, investigators and bioinformaticists from each campus to work with the UCHDW team to create CORDS. By combining patient data from the 5 medical centers, investigators will be enabled to make discoveries they otherwise couldn’t using local data alone. The data set will evolve over time and become more valuable as we include more patients and more clinical depth in the form of additional captured elements.

Streamlined access to CA testing, case, and death data from CPDH. Includes cases, individual positive and negative tests, hospitalizations, deaths, and aggregated data at zip code and census track level

A centralized national COVID-19 data resource that includes clinical, laboratory, and diagnostic data from hospitals and health care plans. UCSF researchers have been approved to access this resource.

Clinical trial data repository - working on adding and curating data from COVID-19 trials

A collection of registered clinical studies related to COVID-19

STAT's guide to some of the most talked-about efforts to treat or prevent coronavirus infection, with details on the science, history, and timeline for each endeavor.

This resource aggregates clinical guidelines for COVID-19 care from leading global health authorities and consolidates them into a single recommendation based on concordance.

The dashboard provides data on COVID-19 testing and positive cases within the UCSF community.

Data and reports from the city of San Francisco related to COVID-19 including cases and deaths, demographics, lab testing, hospitalizations, and hospital capacity.

This dashboard from non-profit journalism site CalMatters covers CA Covid-19 cases, deaths, testing, and state supplies

SF Chronicle's map of every reported coronavirus case in the Bay Area, California and the U.S. Note that this site may be behind a paywall.

This dashboard, created by the non-profit journalism site CalMatters, looks at the breakdown of vaccinations in each CA county by race.

A “model of models” that contains assessments of the spread of COVID-19, short-term forecasts of disease trends, and scenarios of the course of the disease from modeling groups across the country.

Interactive population health mapping website that curates publicly available data and visualizes it at the census tract level. Includes regularly updated information on COVID-19 data in California. Data available for download.

COVID-19 data, maps, and charts provided by the CDC

CDC dataset of aggregate counts of COVID-19 cases and death numbers daily

A NYTimes dashboard of COVID-19 cases in the United States, at the state and county level. The full dataset is also available for download

This tool was developed by Predictive Healthcare at Penn Medicine to assist hospitals and public health officials with hospital capacity planning

Online portal for COVID-19 modeling research

The COVID Racial Data Tracker tracks the impact of COVID on different communities by collecting, publishing, and analyzing racial data on the pandemic from across the United States. It is a collaboration of the COVID Tracking Project and the Antiracist Research & Policy Center.

The Butte Lab at UCSF has partnered with Paul Bleicher MD, PhD, former CEO of OptumLabs, to calculate and visualize COVID-19 statistics for every county in the United States.

This guide from the COVID Tracking Projects describes how to find federal data on cases, tests, deaths, and hospitalizations

This visualization shows the impact of intervention strategies and their combinations on the spread of COVID-19. A collaboration between researchers at Berkeley, University of Illinois, and Georgia Tech.

Data for Black Lives has worked to consolidate state level data to explore the disproportionate impact of COVID-19 on Black people in the US

This NYTimes dashboard tracks vaccine distribution in each state.

2019 Novel Coronavirus Visual Dashboard operated by the Johns Hopkins University Center for Systems Science and Engineering (JHU CSSE). Includes all global cases. Full data is available for download on Github

A centralized open resource of verified case-level data from around the world, sponsored by Google.

The Oxford COVID-19 Government Response Tracker (OxCGRT) aims to track and compare government responses to the coronavirus outbreak worldwide rigorously and consistently

These charts from the Institute for Health Metrics and Evaluation show projected hospital resource use based on COVID-19 deaths. The underlying data is available for download.

Search, retrieve, and analyze SARS-CoV-2 GenBank data

SARS-CoV-2 sequences currently listed in GenBank and the Sequence Read Archive.

SARS-CoV-2 outbreak sequence data and federated European Genome-phenome Archive from the European Commission, EMBL-EBI, and ELIXIR.

Human transcriptional responses to SARS-CoV-2 infection from NCBI Geo

The Broad Terra cloud workspace combines raw COVID-19 sequencing data with workflows and Jupyter Notebooks

A network of infectious disease epidemiologists working with technology companies to use aggregated mobility data to support the COVID-19 response. The goal is to provide daily updates to decision-makers at the state and local levels on how well social distancing interventions are working, using anonymized, aggregated data sets from mobile devices, along with analytic support for interpretation.

A dataset of over 100 million tweets related to COVID-19

A data collection focusing on the social, behavioral, public health, and economic impact of the novel coronavirus global pandemic from the Inter-university Consortium for Political and Social Research (ICPSR)

Open access research articles, software, presentations, and datasets related to COVID-19.

CAS has built an open source dataset assembled from CAS REGISTRY® including known anti-viral drugs and related chemical compounds that are structurally similar to known antivirals. The dataset license terms support use for applications including research, data mining, machine learning, and analytics at no charge.

A searchable dataset of over 280,000 scholarly articles about COVID-19 and the coronavirus family of viruses.

Spreadsheet of over 200 datasets related to COVID-19 pulled from related articles in the Dimensions database

Research datasets, preprints, and figures related to COVID-19

Understanding Coronavirus in America is a survey of attitudes and behaviors around the Novel Coronavirus pandemic in the United States. The survey was launched on March 10, and includes a national bi-weekly long-form questionnaire and a weekly Los Angeles County short-form questionnaire administered in each bi-weekly wave. The Understanding America Study (UAS) is a panel of households at the University of Southern California (USC) of approximately 9,000 respondents representing the entire United States.