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Open Access Publishing Fund

The Open Access Publishing Fund provides funds to UCSF faculty for publishing journal articles and books under an open access model.

Articles Funded by the OA Publishing Fund

This page lists the articles for which open access publication charges were fully or partially paid by the UCSF Open Access Publishing Fund. All articles prior to 2015 and those marked with an asterisk (*) were funded by Library funds. Other articles published from 2015 and on are funded by the Academic Senate.

Funded author name is indicated in bold.

Links are provided when available to usage and sharing metrics about the article from the publisher and from the Altmetric service.

2016

1. Chen Q, Varga M, Wang X, Haddad DJ, An S, Medzikovic L, Derakhshandeh R, Kostyushev DS, Zhang Y, Clifford BT, Luu E, Danforth OM, Rafikov R, Gong W, Black SM, Suchkov SV, Fineman JR, Heiss C, Aschbacher K, Yeghiazarians Y, Springer, ML. Overexpression of Nitric Oxide Synthase Restores Circulating Angiogenic Cell Function in Patients With Coronary Artery Disease: Implications for Autologous Cell Therapy for Myocardial Infarction. Journal of the American Heart Association 2016, 5.
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2. Gouse H, Magidson JF, Burnhams W, Remmert JE, Myers B, Joska JA, Carrico, AW. Implementation of Cognitive-Behavioral Substance Abuse Treatment in Sub-Saharan Africa: Treatment Engagement and Abstinence at Treatment Exit. PLoS ONE 2016, 11:e0147900.
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3. Montoy JC, Dow WH, Kaplan BC: Patient choice in opt-in, active choice, and opt-out HIV screening: randomized clinical trial. BMJ 2016, 532:h6895.
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4. Cataldo JK: High-risk older smokers’ perceptions, attitudes, and beliefs about lung cancer screening. Cancer Med 2016, 5:753–759.
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5. Treves-Kagan S, Steward WT, Ntswane L, Haller R, Gilvydis JM, Gulati H, Barnhart S, Lippman SA: Why increasing availability of ART is not enough: a rapid, community-based study on how HIV-related stigma impacts engagement to care in rural South Africa. BMC Public Health 2016, 16:87.
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6. Freeman E, Semeere A, Wenger M, Bwana M, Asirwa FC, Busakhala N, Oga E, Jedy-Agba E, Kwaghe V, Iregbu K, Jaquet A, Dabis F, Yumo HA, Dusingize JC, Bangsberg D, Anastos K, Phiri S, Bohlius J, Egger M, Yiannoutsos C, Wools-Kaloustian K, Martin J: Pitfalls of practicing cancer epidemiology in resource-limited settings: the case of survival and loss to follow-up after a diagnosis of Kaposi’s sarcoma in five countries across sub-Saharan Africa. BMC Cancer 2016, 16:65.
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7. Garg SK, Lyles CR, Ackerman S, Handley MA, Schillinger D, Gourley G, Aulakh V, Sarkar U: Qualitative analysis of programmatic initiatives to text patients with mobile devices in resource-limited health systems. BMC Med Inform Decis Mak 2016, 16:16.
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8. Brodie FL, Kalin-Hajdu E, Kuo DS, Hirabayashi KE, Vagefi R, Kersten RC: Orbital compartment syndrome following retrobulbar injection of amphotericin B for invasive fungal disease. American journal of ophthalmology case reports 2016, 1:8–10.
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9. El Ayadi AM, Nathan HL, Seed PT, Butrick EA, Hezelgrave NL, Shennan AH, Miller S: Vital Sign Prediction of Adverse Maternal Outcomes in Women with Hypovolemic Shock: The Role of Shock Index. PLoS ONE 2016, 11:e0148729.
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10. Robblee MM, Kim CC, Porter Abate J, Valdearcos M, Sandlund KL, Shenoy MK, Volmer R, Iwawaki T, Koliwad SK: Saturated Fatty Acids Engage an IRE1α-Dependent Pathway to Activate the NLRP3 Inflammasome in Myeloid Cells. Cell Rep 2016, 14:2611–2623.
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11. Yamey G, Horváth H, Schmidt L, Myers J, Brindis CD: Reducing the global burden of Preterm Birth through knowledge transfer and exchange: a research agenda for engaging effectively with policymakers. Reprod Health 2016, 13:26.
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12. Song S, Faleo G, Yeung R, Kant R, Posselt AM, Desai TA, Tang Q, Roy S: Silicon nanopore membrane (SNM) for islet encapsulation and immunoisolation under convective transport. Sci Rep 2016, 6:23679.
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13. Camlin CS, Seeley J, Viljoen L, Vernooij E, Simwinga M, Reynolds L, Reis R, Plank R, Orne-Gliemann J, McGrath N, Larmarange J, Hoddinott G, Getahun M, Charlebois ED, Bond V: Strengthening universal HIV “test-and-treat” approaches with social science research. AIDS 2016, 30:969–970.
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14. Le ST, Hsia RY: Community characteristics associated with where urgent care centers are located: a cross-sectional analysis. BMJ Open 2016, 6:e010663.
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15. Yu Y, Chen J, Leary CI, Shugard E, Yom SS: Split-field vs extended-field intensity-modulated radiation therapy plans for oropharyngeal cancer: Which spares the larynx? Which spares the thyroid? Med Dosim 2016, 41:148–153.
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16. Schlosser D, Campellone T, Kim D, Truong B, Vergani S, Ward C, Vinogradov S: Feasibility of PRIME: A Cognitive Neuroscience-Informed Mobile App Intervention to Enhance Motivated Behavior and Improve Quality of Life in Recent Onset Schizophrenia. JMIR Res Protoc 2016, 5:e77.
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17. Odisho AY, Rabban JT, Meng MV: Development of CNS-type Primitive Neuroectodermal Tumor in Metastatic Testicular Mixed Germ Cell Tumor. Urology case reports 2016, 6:7–8.
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18. Brown RT, Goodman L, Guzman D, Tieu L, Ponath C, Kushel MB: Pathways to Homelessness among Older Homeless Adults: Results from the HOPE HOME Study. PLoS ONE 2016, 11:e0155065.
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19. Handley MA, Harleman E, Gonzalez-Mendez E, Stotland NE, Althavale P, Fisher L, Martinez D, Ko J, Sausjord I, Rios C: Applying the COM-B model to creation of an IT-enabled health coaching and resource linkage program for low-income Latina moms with recent gestational diabetes: the STAR MAMA program. Implement Sci 2016, 11:73.
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20. Balkin DM, Duh QY, Kind GM, Chang DS, McGrath MH: Failed pneumoperitoneum for laparoscopic surgery following autologous Deep Inferior Epigastric Perforator (DIEP) flap breast reconstruction: a case report. BMC Surg 2016, 16:28.
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2015

1. Fischer M, Shoichet BK, Fraser JS: One Crystal, Two Temperatures: Cryocooling Penalties Alter Ligand Binding to Transient Protein Sites. Chembiochem 2015, 16:1560–1564.
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2.* Amanzadeh B, Sokal-Gutierrez K, Barker JC: An interpretive study of food, snack and beverage advertisements in rural and urban El Salvador. BMC Public Health 2015, 15:521.
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3. Breitnauer BT, Mmeje O, Njoroge B, Darbes LA, Leddy A, Brown J: Community perceptions of childbearing and use of safer conception strategies among HIV-discordant couples in Kisumu, Kenya. J Int AIDS Soc 2015, 18:19972.
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4. Khankhanian P, Matsushita T, Madireddy L, Lizée A, Din L, Moré JM, Gourraud PA, Hauser SL, Baranzini SE, Oksenberg JR: Genetic contribution to multiple sclerosis risk among Ashkenazi Jews. BMC Med Genet 2015, 16:55.
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5. Quigley D: Equalizer reduces SNP bias in Affymetrix microarrays. BMC Bioinformatics 2015, 16:238.
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6. Chan B, Lopez A, Sarkar U: The Canary in the Coal Mine Tweets: Social Media Reveals Public Perceptions of Non-Medical Use of Opioids. PLoS ONE 2015, 10:e0135072.
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7. Hagey JM, Akama E, Ayieko J, Bukusi EA, Cohen CR, Patel RC: Barriers and facilitators adolescent females living with HIV face in accessing contraceptive services: a qualitative assessment of providers’ perceptions in western Kenya. J Int AIDS Soc 2015, 18:20123.
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8. De Smith AJ, Walsh KM, Hansen HM, Endicott AA, Wiencke JK, Metayer C, Wiemels JL: Somatic Mutation Allelic Ratio Test Using ddPCR (SMART-ddPCR): An Accurate Method for Assessment of Preferential Allelic Imbalance in Tumor DNA. PLoS ONE 2015, 10:e0143343.
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9. Rodriguez RM, Langdorf MI, Nishijima D, Baumann BM, Hendey GW, Medak AJ, Raja AS, Allen IE, Mower WR: Derivation and Validation of Two Decision Instruments for Selective Chest CT in Blunt Trauma: A Multicenter Prospective Observational Study (NEXUS Chest CT). PLoS Med 2015, 12:e1001883.
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10. Whittle HJ, Palar K, Napoles T, Hufstedler LL, Ching I, Hecht FM, Frongillo EA, Weiser SD: Experiences with food insecurity and risky sex among low-income people living with HIV/AIDS in a resource-rich setting. J Int AIDS Soc 2015, 18:20293.
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11. Zafer M, Horvath H, Mmeje O, van der Poel S, Semprini AE, Rutherford G, Brown J: Effectiveness of semen washing to prevent human immunodeficiency virus (HIV) transmission and assist pregnancy in HIV-discordant couples: a systematic review and meta-analysis. Fertil Steril 2015.
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12. Leutwyler H, Hubbard E, Cooper B, Dowling G: The Impact of a Videogame-Based Pilot Physical Activity Program in Older Adults with Schizophrenia on Subjectively and Objectively Measured Physical Activity. Frontiers in psychiatry 2015, 6:180.
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13. Lee A, Vásquez LJ, Wong WC, Shin J. Evaluation of dietary supplement advertisements in popular Spanish, Chinese, and Korean media outlets: a cross sectional study. BMC Nutrition 2015, 1:1.
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14. Goldblatt A, Kwena Z, Lahiff M, Agot K, Minnis A, Prata N, Lin J, Bukusi EA, Auerswald CL: Prevalence and Correlates of HIV Infection among Street Boys in Kisumu, Kenya. PLoS ONE 2015, 10:e0140005.
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15. Tieu L, Sarkar U, Schillinger D, Ralston JD, Ratanawongsa N, Pasick R, Lyles CR: Barriers and Facilitators to Online Portal Use Among Patients and Caregivers in a Safety Net Health Care System: A Qualitative Study. J Med Internet Res 2015, 17:e275.
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2014

1. Burish MJ, Aysenne A, Singh V: Multifocal subdural hematomas as the presenting sign of acquired hemophilia A: a case report. BMC Res Notes 2014, 7:134.
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2. Alegría DA, Boscardin C, Poncelet A, Mayfield C, Wamsley M: Using tablets to support self-regulated learning in a longitudinal integrated clerkship. Med Educ Online 2014, 19:23638.
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3. Nagata JM, Cohen CR, Young SL, Wamuyu C, Armes MN, Otieno BO, Leslie HH, Dandu M, Stewart CC, Bukusi EA, Weiser SD: Descriptive characteristics and health outcomes of the food by prescription nutrition supplementation program for adults living with HIV in Nyanza Province, Kenya. PLoS ONE 2014, 9:e91403.
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4. Saslow LR, Kim S, Daubenmier JJ, Moskowitz JT, Phinney SD, Goldman V, Murphy EJ, Cox RM, Moran P, Hecht FM: A randomized pilot trial of a moderate carbohydrate diet compared to a very low carbohydrate diet in overweight or obese individuals with type 2 diabetes mellitus or prediabetes. PLoS ONE 2014, 9:e91027.
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5. Carrico AW, Flentje A, Gruber VA, Woods WJ, Discepola MV, Dilworth SE, Neilands TB, Jain J, Siever MD: Community-based harm reduction substance abuse treatment with methamphetamine-using men who have sex with men. J Urban Health 2014, 91:555–567.
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6. Saba GW, Chou CL, Satterfield J, Teherani A, Hauer K, Poncelet A, Chen HC: Teaching patient-centered communication skills: a telephone follow-up curriculum for medical students. Med Educ Online 2014, 19:22522.
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7. Richardson CD, Li JJ: Regulatory mechanisms that prevent re-initiation of DNA replication can be locally modulated at origins by nearby sequence elements. PLoS Genet 2014, 10:e1004358.
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8. Harris PR, Stein PK, Fung GL, Drew BJ: Heart rate variability measured early in patients with evolving acute coronary syndrome and 1-year outcomes of rehospitalization and mortality. Vasc Health Risk Manag 2014, 10:451–464.
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9. Weyland PG, Grant WB, Howie-Esquivel J: Does sufficient evidence exist to support a causal association between vitamin D status and cardiovascular disease risk? An assessment using Hill’s criteria for causality. Nutrients 2014, 6:3403–3430.
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2013

1. Amans M, Dillon W: Cerebral parenchymal cyst: A rare complication of ventriculoperitoneal shunt malfunction in an adult. Radiol Case Rep 2013, 8.

2. Caldwell N, Srebotnjak T, Wang T, Hsia R: How much will I get charged for this?" Patient charges for top ten diagnoses in the emergency department. PLoS ONE 2013, 8:e55491.
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3. Park M, Vittinghoff E, Liu KD, Shlipak MG, Hsu CY: Urine Biomarkers Neutrophil Gelatinase-Associated Lipocalin (NGAL) and Kidney Injury Molecule-1 (KIM-1) Have Different Patterns in Heart Failure Exacerbation. Biomark Insights 2013, 8:15–18.
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4. Connolly CG, Bell RP, Foxe JJ, Garavan H: Dissociated grey matter changes with prolonged addiction and extended abstinence in cocaine users. PLoS ONE 2013, 8:e59645.
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5. Tringali S, Oberer CW, Huang J: Low Diastolic Blood Pressure as a Risk for All-Cause Mortality in VA Patients. Int J Hypertens 2013, 2013:178780.

6. Mallott J, Kwan A, Church J, Gonzalez-Espinosa D, Lorey F, Tang LF, Sunderam U, Rana S, Srinivasan R, Brenner SE, Puck J: Newborn screening for SCID identifies patients with ataxia telangiectasia. J Clin Immunol 2013, 33:540–549.
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7. Fang Q, Mok PY, Thomas AE, Haddad DJ, Saini SA, Clifford BT, Kapasi NK, Danforth OM, Usui M, Ye W, Luu E, Sharma R, Bartel MJ, Pathmanabhan JA, Ang AA, Sievers RE, Lee RJ, Springer ML: Pleiotrophin gene therapy for peripheral ischemia: evaluation of full-length and truncated gene variants. PLoS ONE 2013, 8:e61413.
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8. Tymofiyeva O, Hess CP, Ziv E, Lee PN, Glass HC, Ferriero DM, Barkovich AJ, Xu D: A DTI-based template-free cortical connectome study of brain maturation. PLoS ONE 2013, 8:e63310.
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9. Singh V, Edwards NJ: Advances in the critical care management of ischemic stroke. Stroke Res Treat 2013, 2013:510481.

10. Mehling WE, Daubenmier J, Price CJ, Acree M, Bartmess E, Stewart AL: Self-reported interoceptive awareness in primary care patients with past or current low back pain. J Pain Res 2013, 6:403–418.
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11. Azzam A: As technology and generations in medical education change, what remains is the intersection between educator, learners, assessment and context. Int Rev Psychiatry 2013, 25:347–356.
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12. Detz A, López A, Sarkar U: Long-term doctor-patient relationships: patient perspective from online reviews. J Med Internet Res 2013, 15:e131.
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13. Wilson JP, Kanaya AM, Fan B, Shepherd JA: Ratio of trunk to leg volume as a new body shape metric for diabetes and mortality. PLoS ONE 2013, 8:e68716.
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14. Lim AG, Stock L, Shwe Oo EK, Jutte DP: Trauma and mental health of medics in eastern Myanmar’s conflict zones: a cross-sectional and mixed methods investigation. Confl Health 2013, 7:15.
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15. Millman AJ, Dowdy DW, Miller CR, Brownell R, Metcalfe JZ, Cattamanchi A, Davis JL: Rapid molecular testing for TB to guide respiratory isolation in the U.S.: a cost-benefit analysis. PLoS ONE 2013, 8:e79669.
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16. Khankhanian P, Baranzini SE, Johnson BA, Madireddy L, Nickles D, Croen LA, Wu YW: Sequencing of the IL6 gene in a case-control study of cerebral palsy in children. BMC Med Genet 2013, 14:126.
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17. Johnson AD, Thomson DR, Atwood S, Alley I, Beckerman JL, Koné I, Diakité D, Diallo H, Traoré B, Traoré K, Farmer PE, Murray M, Mukherjee J: Assessing early access to care and child survival during a health system strengthening intervention in Mali: a repeated cross sectional survey. PLoS ONE 2013, 8:e81304.
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